ReDU: a framework to find and reanalyze public mass spectrometry data

Jarmusch A.K.; Wang M.; Aceves C.M.; Advani R.S.; Aguirre S.; Aksenov A.A.; Aleti G.; Aron A.T.; Bauermeister A.; Bolleddu S.; Bouslimani A.; Caraballo Rodriguez A.M.; Chaar R.; Coras R.; Elijah E.O.; Ernst M.; Gauglitz J.M.; Gentry E.C.; Husband M.; Jarmusch S.A.; Jones K.L.; II; Kamenik Z.; Le Gouellec A.; Lu A.; McCall L.-I.; McPhail K.L.; Meehan M.J.; Melnik A.V.; Menezes R.C.; Montoya Giraldo Y.A.; Nguyen N.H.; Nothias L.F.; Nothias-Esposito M.; Panitchpakdi M.; Petras D.; Quinn R.A.; Sikora N.; van der Hooft J.J.J.; Vargas F.; Vrbanac A.; Weldon K.C.; Knight R.; Bandeira N.; Dorrestein P.C.

ReDU: a framework to find and reanalyze public mass spectrometry data

Fecha

2020-01-01

Autores

Jarmusch A.K.

Wang M.

Aceves C.M.

Advani R.S.

Aguirre S.

Aksenov A.A.

Aleti G.

Aron A.T.

Bauermeister A.

Bolleddu S.

ISSN de la revista

15487091
15487105

Editor

Nature Publishing Group

Resumen

We present ReDU (https://redu.ucsd.edu/), a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one’s own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking. © 2020, The Author(s), under exclusive licence to Springer Nature America, Inc.