Examinando por Materia "vertebrate"

Mostrando 1 - 2 de 2
  • No hay miniatura disponible
    Ítem
    Material properties of mandibular cortical bone in the American alligator, Alligator mississippiensis
    (ELSEVIER SCIENCE INC, 2010-03-01) Zapata, Uriel; Metzger, Keith; Wang, Qian; Elsey, Ruth M.; Ross, Callum F.; Dechow, Paul C.; Universidad EAFIT. Departamento de Ingeniería Mecánica; Bioingeniería GIB (CES – EAFIT)
    This study reports the elastic material properties of cortical bone in the mandible of juvenile Alligator mississippiensis obtained by using an ultrasonic wave technique. The elastic modulus, the shear modulus, and Poisson's ratio were measured on 42 cylindrical Alligator bone specimens obtained from the lingual and facial surfaces of 4 fresh Alligator mandibles. The data suggest that the elastic properties of alligator mandibular cortical bone are similar to those found in mammals and are orthotropic. The properties most resemble those found in the cortex of mammalian postcranial long bones where the bone is most stiff in one direction and much less stiff in the two remaining orthogonal directions. This is different from cortical bone found in the mandibles of humans and some monkeys, where the bone has greatest stiffness in one direction, much less stiffness in another direction, and an intermediate amount in the third orthogonal direction. This difference suggests a relationship between levels of orthotropy and bending stress. The comparability of these elastic moduli to those of other vertebrates suggest that the high bone strain magnitudes recorded from the alligator mandible in vivo are not attributable to a lower stiffness of alligator mandibular bone. © 2009 Elsevier Inc.
  • No hay miniatura disponible
    Publicación
    Rapid mitochondrial genome sequencing based on Oxford Nanopore Sequencing and a proxy for vertebrate species identification
    (John Wiley and Sons Ltd, 2020-01-01) Franco-Sierra, N.D.; Díaz-Nieto, J.F.; Universidad EAFIT. Departamento de Ciencias; Biodiversidad, Evolución y Conservación
    Molecular information is crucial for species identification when facing challenging morphology-based specimen identifications. The use of DNA barcodes partially solves this problem, but in some cases when PCR is not an option (i.e., primers are not available, problems in reaction standardization), amplification-free approaches could be an optimal alternative. Recent advances in DNA sequencing, like the MinION device from Oxford Nanopore Technologies (ONT), allow to obtain genomic data with low laboratory and technical requirements, and at a relatively low cost. In this study, we explore ONT sequencing for molecular species identification from a total DNA sample obtained from a neotropical rodent and we also test the technology for complete mitochondrial genome reconstruction via genome skimming. We were able to obtain “de novo” the complete mitogenome of a specimen from the genus Melanomys (Cricetidae: Sigmodontinae) with average depth coverage of 78X using ONT-only data and by combining multiple assembly routines. Our pipeline for an automated species identification was able to identify the sample using unassembled sequence data (raw) in a reasonable computing time, which was substantially reduced when a priori information related to the organism identity was known. Our findings suggest ONT sequencing as a suitable candidate to solve species identification problems in metazoan nonmodel organisms and generate complete mtDNA datasets. © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.